Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015908982.1_cds_XP_016459226.1_52775
CDS Infomation

[gene=LOC107782803] [db_xref=GeneID:107782803] [protein=lysine-specific demethylase JMJ706-like] [protein_id=XP_016459226.1] [location=complement(join(31095..31283,31546..31650,31942..32147,32353..32742,32851..33128,33218..33297,33381..33434,33669..33888,34051..34207,34860..35067))] [gbkey=CDS]
Sequence

ATGCCAACAAAACCTGCAAGAAAAGTGAAGAAACCTTGTTATCATGGCGTAAAAGTTTCT
CAAAAAAGGAATGTCGGTCACCTTAGTACGAGTGAGTTTGATTGGATTGATACGATCGAA
GAATGCCCAGTATATCATCCATCCAAGGAAGAATTTGAGGATCCCTTGGTTTATGTGCAG
AAAATTGCTCTTGAAGCATCAAAATTTGGCATTTGTAAGGTTGTCTCTCCTCTGGGATCT
TCTGTTCCACCGGGAGCAGTATTGATGAAAGAGCGAAAAGGTTTTAAGTTTACCACTAAG
CTGCAACCTCTGCGACTTGCTGAATGGAATAACAACGATAAGATCTCCTTCTTCATGAGA
GGAAGAAATTACACTATCCGTGATTTTGAGATAATGGCAAACAAGGCAACAGCTCGTAGA
TATTGTATATCTGGATGCCTTCCTCCTGCATATGTGGAAAAGGAATTCTGGAAAGAAATG
GTACATGCAAAGAAAGGGATGGTTGAGTATGGAATTAATATAGATGGTAGTGCCTTCTCA
AGCACTTTCAATGATCCTCTTGGAAGTAGCAAATGGAATTTTAAGATACTACCTCGGCTG
CGAAGATCCACATTACGCTTGCTTGTAAACGAAATCCCGGGAGTAACAGAACCAATGCTA
TACATTGGGATGCTATTTAGTATGTTTGCGTGGCATGTGGAGGATCATTACCTCTATAGC
ATTAATTATCATCATTGTGGGGCGCCCAAAACTTGGTATGGAGTTCCTGGTCATGCAGCT
GTTCAGTTTGAGAATCTTATTCGGCATCATGTCTACAATGAGGAAATCCTATCAGAAAAT
GGGGTCAACGGAGTCTTTGATGTTCTTCAAGAGAAAACAACAATGGTTTCTCCAAAAATT
CTGCTGCAATATGATGTCCCAGTTTACAAGGCTGCGCAAATGCCAGGAGAGTTTGTTATT
ACCTTCCCTAGAGCATACCATTCAGGATTTAGCCATGGCTTTAACTGTGGCGAGGCCGTG
AATTTTGCAATTGATGAATGGTTTCCATTTGGTGCTGAAGCTAGTGAACGTTATGCTCTT
CTTGGCAAGGTGCCAATTATTCCTTATGAGGAGCTCCTATGTGCGGAAGCAATGCGTCTC
CCAGAGTCTTTAGCTCACATACCTTGTTGCTTGGCAGATTTAGTCTCAGTTCGTTGTGTA
ATGACTTCATTTTCTTTCCTATTGAGATCATACCACCGTGCCCGCTGGTGCTTGATGAAG
TTTAAGACTTCACTTAAAATGTGTTTAAAACCTCGAGAATCCTTCGCCTGCATCCTCTGC
AAACGACTATGTTACGTGGCATACATTGAATGCAAATGTTCCGCTGGTCCCATATGCCTT
TTTCATGATTTTGAAACTTATAACTGTCTATGTGGAAGTAGCTGCAGCCTCTTTGTTACA
GAGGACATTTCAAAAATGGAAGCTGTTGCACAGATGTTTGAGGCTGAGGAAGGAATACTC
TGTGAGGTTGAGCAAAAAATGAAGTCTGAACCTTACTTGTGGATGCAGACTTTATCTCCG
TGCACGAAAGGAAAATATAGTCCGTATTGCGAGATAATGCCAATAAATACTCAAAAAAAC
GAGGCCACTTGTATAAAGATGTCCAGGATCAGAAGAACTTCTGCTCAAGACAAGCAAAGG
AGGAATAAGAAGAAAAAGTGTTACAGAGAATCAATTGAGCTTGGAAATGAAGGAATGTAT
CCCAGGAGTGCTATTCTTGTAAACAGCAAGAAAATGACACCACGGAAAAGAAAGTCTCAA
AGACATAGCTCTGGTACTGAAGATGACGGACCATCATTTTCTAAAGGTAAATGCAGCCGA
TATCAGGAAGTAGATGACACCAAATGA

Peptide Sequence

PEP ID

XP_016459226.1
PEP Infomation

PREDICTED: lysine-specific demethylase JMJ706-like [Nicotiana tabacum]
Sequence

MPTKPARKVKKPCYHGVKVSQKRNVGHLSTSEFDWIDTIEECPVYHPSKEEFEDPLVYVQ
KIALEASKFGICKVVSPLGSSVPPGAVLMKERKGFKFTTKLQPLRLAEWNNNDKISFFMR
GRNYTIRDFEIMANKATARRYCISGCLPPAYVEKEFWKEMVHAKKGMVEYGINIDGSAFS
STFNDPLGSSKWNFKILPRLRRSTLRLLVNEIPGVTEPMLYIGMLFSMFAWHVEDHYLYS
INYHHCGAPKTWYGVPGHAAVQFENLIRHHVYNEEILSENGVNGVFDVLQEKTTMVSPKI
LLQYDVPVYKAAQMPGEFVITFPRAYHSGFSHGFNCGEAVNFAIDEWFPFGAEASERYAL
LGKVPIIPYEELLCAEAMRLPESLAHIPCCLADLVSVRCVMTSFSFLLRSYHRARWCLMK
FKTSLKMCLKPRESFACILCKRLCYVAYIECKCSAGPICLFHDFETYNCLCGSSCSLFVT
EDISKMEAVAQMFEAEEGILCEVEQKMKSEPYLWMQTLSPCTKGKYSPYCEIMPINTQKN
EATCIKMSRIRRTSAQDKQRRNKKKKCYRESIELGNEGMYPRSAILVNSKKMTPRKRKSQ
RHSSGTEDDGPSFSKGKCSRYQEVDDTK

Transcript Sequence

Gene sequence data has not been registered.